HL_8UJ9_089
3D structure
- PDB id
- 8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human P state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.64 Å
Loop
- Sequence
- UCAGGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UJ9_089 not in the Motif Atlas
- Homologous match to HL_8CRE_199
- Geometric discrepancy: 0.1594
- The information below is about HL_8CRE_199
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_34789.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 335
Unit IDs
8UJ9|1|S2|U|416
8UJ9|1|S2|C|417
8UJ9|1|S2|A|418
8UJ9|1|S2|G|419
8UJ9|1|S2|G|420
8UJ9|1|S2|G|421
Current chains
- Chain S2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain SC
- 40S ribosomal protein S2
- Chain SJ
- 40S ribosomal protein S9
- Chain SL
- 40S ribosomal protein S11
- Chain SW
- 40S ribosomal protein S15a
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