3D structure

PDB id
8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
UCAGGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UJ9_089 not in the Motif Atlas
Homologous match to HL_8CRE_199
Geometric discrepancy: 0.1594
The information below is about HL_8CRE_199
Detailed Annotation
GNRA variation
Broad Annotation
GNRA variation
Motif group
HL_34789.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
335

Unit IDs

8UJ9|1|S2|U|416
8UJ9|1|S2|C|417
8UJ9|1|S2|A|418
8UJ9|1|S2|G|419
8UJ9|1|S2|G|420
8UJ9|1|S2|G|421

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain SC
40S ribosomal protein S2
Chain SJ
40S ribosomal protein S9
Chain SL
40S ribosomal protein S11
Chain SW
40S ribosomal protein S15a

Coloring options:


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