3D structure

PDB id
8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
CGACCCG
Length
7 nucleotides
Bulged bases
8UJ9|1|S2|A|500, 8UJ9|1|S2|C|502, 8UJ9|1|S2|C|503
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UJ9_092 not in the Motif Atlas
Homologous match to HL_8CRE_202
Geometric discrepancy: 0.2531
The information below is about HL_8CRE_202
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_89167.1
Basepair signature
cWW-F-F
Number of instances in this motif group
20

Unit IDs

8UJ9|1|S2|C|498
8UJ9|1|S2|G|499
8UJ9|1|S2|A|500
8UJ9|1|S2|C|501
8UJ9|1|S2|C|502
8UJ9|1|S2|C|503
8UJ9|1|S2|G|504

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain SE
Small ribosomal subunit protein eS4, X isoform
Chain SY
40S ribosomal protein S24

Coloring options:


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