3D structure

PDB id
8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
CCGAGCCG
Length
8 nucleotides
Bulged bases
8UJ9|1|S2|G|836, 8UJ9|1|S2|G|838, 8UJ9|1|S2|C|840
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8UJ9|1|S2|C|834
8UJ9|1|S2|C|835
8UJ9|1|S2|G|836
8UJ9|1|S2|A|837
8UJ9|1|S2|G|838
8UJ9|1|S2|C|839
8UJ9|1|S2|C|840
8UJ9|1|S2|G|841

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain SE
Small ribosomal subunit protein eS4, X isoform
Chain SY
40S ribosomal protein S24

Coloring options:

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