HL_8UJ9_107

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJ9_107 not in the Motif Atlas

Homologous match to HL_8P9A_217

Geometric discrepancy: 0.193

The information below is about HL_8P9A_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8UJ9|1|S2|A|1353
8UJ9|1|S2|G|1354
8UJ9|1|S2|C|1355
8UJ9|1|S2|G|1356
8UJ9|1|S2|A|1357
8UJ9|1|S2|U|1358

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SA

40S ribosomal protein SA

Chain SC

40S ribosomal protein S2