HL_8UJ9_110

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJ9_110 not in the Motif Atlas

Homologous match to HL_8CRE_221

Geometric discrepancy: 0.1859

The information below is about HL_8CRE_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

9

Unit IDs

8UJ9|1|S2|C|1460
8UJ9|1|S2|G|1461
8UJ9|1|S2|U|1462
8UJ9|1|S2|U|1463
8UJ9|1|S2|C|1464
8UJ9|1|S2|A|1465
8UJ9|1|S2|G|1466

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SR

Small ribosomal subunit protein eS17

Chain Sg

Receptor of activated protein C kinase 1