HL_8UJB_013

3D structure

PDB id

8UJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GGCGGACUGUCCCCAGUGCGCC

Length

22 nucleotides

Bulged bases

8UJB|1|L5|C|1172, 8UJB|1|L5|G|1178, 8UJB|1|L5|U|1179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJB|1|L5|G|1170
8UJB|1|L5|G|1171
8UJB|1|L5|C|1172
8UJB|1|L5|G|1173
8UJB|1|L5|G|1174
8UJB|1|L5|A|1175
8UJB|1|L5|C|1176
8UJB|1|L5|U|1177
8UJB|1|L5|G|1178
8UJB|1|L5|U|1179
8UJB|1|L5|C|1180
8UJB|1|L5|C|1181
8UJB|1|L5|C|1182
8UJB|1|L5|C|1183
8UJB|1|L5|A|1184
8UJB|1|L5|G|1185
8UJB|1|L5|U|1186
8UJB|1|L5|G|1187
8UJB|1|L5|C|1188
8UJB|1|L5|G|1189
8UJB|1|L5|C|1190
8UJB|1|L5|C|1191

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

Large ribosomal subunit protein uL18

Chain LI

Ribosomal protein uL16-like