HL_8UJB_019

3D structure

PDB id

8UJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CCUCUCCAGUCCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJB|1|L5|C|1436
8UJB|1|L5|C|1437
8UJB|1|L5|U|1438
8UJB|1|L5|C|1439
8UJB|1|L5|U|1440
8UJB|1|L5|C|1441
8UJB|1|L5|C|1442
8UJB|1|L5|A|1443
8UJB|1|L5|G|1444
8UJB|1|L5|U|1445
8UJB|1|L5|C|1446
8UJB|1|L5|C|1447
8UJB|1|L5|G|1448

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LF

60S ribosomal protein L7

Chain LQ

60S ribosomal protein L18

Chain Lb

Large ribosomal subunit protein eL29