HL_8UJB_030

3D structure

PDB id

8UJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJB_030 not in the Motif Atlas

Homologous match to HL_8CRE_027

Geometric discrepancy: 0.176

The information below is about HL_8CRE_027

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8UJB|1|L5|U|2006
8UJB|1|L5|G|2007
8UJB|1|L5|U|2008
8UJB|1|L5|A|2009
8UJB|1|L5|A|2010
8UJB|1|L5|C|2011
8UJB|1|L5|A|2012
8UJB|1|L5|A|2013

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lm

Large ribosomal subunit protein eL40

Chain Ls

60S acidic ribosomal protein P0