HL_8UJB_058

3D structure

PDB id

8UJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CGCGCGCCGG

Length

10 nucleotides

Bulged bases

8UJB|1|L5|G|4141, 8UJB|1|L5|C|4142, 8UJB|1|L5|C|4144

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJB|1|L5|C|4138
8UJB|1|L5|G|4139
8UJB|1|L5|C|4140
8UJB|1|L5|G|4141
8UJB|1|L5|C|4142
8UJB|1|L5|G|4143
8UJB|1|L5|C|4144
8UJB|1|L5|C|4145
8UJB|1|L5|G|4146
8UJB|1|L5|G|4147

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LG

60S ribosomal protein L7a

Chain LZ

60S ribosomal protein L27