HL_8UJB_059

3D structure

PDB id

8UJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8UJB|1|L5|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJB_059 not in the Motif Atlas

Homologous match to HL_8P9A_165

Geometric discrepancy: 0.089

The information below is about HL_8P9A_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

8UJB|1|L5|C|4193
8UJB|1|L5|U|4194
8UJB|1|L5|G|4195
8UJB|1|L5|G|4196
8UJB|1|L5|G|4197
8UJB|1|L5|G|4198
8UJB|1|L5|C|4199
8UJB|1|L5|G|4200
8UJB|1|L5|G|4201

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Ribosomal protein uL16-like

Chain Lb

Large ribosomal subunit protein eL29