HL_8UJB_072

3D structure

PDB id

8UJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8UJB|1|L5|G|4694, 8UJB|1|L5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJB_072 not in the Motif Atlas

Homologous match to HL_8CRE_066

Geometric discrepancy: 0.0733

The information below is about HL_8CRE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8UJB|1|L5|C|4688
8UJB|1|L5|U|4689
8UJB|1|L5|G|4690
8UJB|1|L5|A|4691
8UJB|1|L5|A|4692
8UJB|1|L5|C|4693
8UJB|1|L5|G|4694
8UJB|1|L5|C|4695
8UJB|1|L5|C|4696
8UJB|1|L5|U|4697
8UJB|1|L5|C|4698
8UJB|1|L5|U|4699
8UJB|1|L5|A|4700
8UJB|1|L5|A|4701
8UJB|1|L5|G|4702

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Large ribosomal subunit protein eL40