HL_8UJB_076

3D structure

PDB id

8UJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

8UJB|1|L5|C|5023, 8UJB|1|L5|C|5024, 8UJB|1|L5|C|5025, 8UJB|1|L5|U|5026, 8UJB|1|L5|C|5027

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJB_076 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.3122

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8UJB|1|L5|C|5021
8UJB|1|L5|U|5022
8UJB|1|L5|C|5023
8UJB|1|L5|C|5024
8UJB|1|L5|C|5025
8UJB|1|L5|U|5026
8UJB|1|L5|C|5027
8UJB|1|L5|G|5028

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LU

Heparin-binding protein HBp15

Chain SI

40S ribosomal protein S8