HL_8UJB_098

3D structure

PDB id

8UJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

UCUCGGCCGGGGCCCGAA

Length

18 nucleotides

Bulged bases

8UJB|1|S2|G|751, 8UJB|1|S2|G|752, 8UJB|1|S2|C|753, 8UJB|1|S2|C|785, 8UJB|1|S2|G|788, 8UJB|1|S2|G|789, 8UJB|1|S2|C|790, 8UJB|1|S2|C|791, 8UJB|1|S2|C|792

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJB|1|S2|U|747
8UJB|1|S2|C|748
8UJB|1|S2|U|749
8UJB|1|S2|C|750
8UJB|1|S2|G|751
8UJB|1|S2|G|752
8UJB|1|S2|C|753
8UJB|1|S2|C|785
8UJB|1|S2|G|786
8UJB|1|S2|G|787
8UJB|1|S2|G|788
8UJB|1|S2|G|789
8UJB|1|S2|C|790
8UJB|1|S2|C|791
8UJB|1|S2|C|792
8UJB|1|S2|G|793
8UJB|1|S2|A|794
8UJB|1|S2|A|795

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SG

40S ribosomal protein S6

Chain SH

Small ribosomal subunit protein eS7