HL_8UJB_112

3D structure

PDB id

8UJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CCCCGAGCG

Length

9 nucleotides

Bulged bases

8UJB|1|S2|A|1421, 8UJB|1|S2|C|1423

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJB_112 not in the Motif Atlas

Homologous match to HL_8CRE_220

Geometric discrepancy: 0.4814

The information below is about HL_8CRE_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

8UJB|1|S2|C|1416
8UJB|1|S2|C|1417
8UJB|1|S2|C|1418
8UJB|1|S2|C|1419
8UJB|1|S2|G|1420
8UJB|1|S2|A|1421
8UJB|1|S2|G|1422
8UJB|1|S2|C|1423
8UJB|1|S2|G|1424

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

Small ribosomal subunit protein uS9

Chain ST

40S ribosomal protein S19