HL_8UJB_117
3D structure
- PDB id
- 8UJB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 80S ribosome with EBP1 (consensus map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- CGGGGUCGGCCCACGGCCCUGG
- Length
- 22 nucleotides
- Bulged bases
- 8UJB|1|S2|G|1760, 8UJB|1|S2|C|1762, 8UJB|1|S2|G|1763, 8UJB|1|S2|G|1764, 8UJB|1|S2|C|1765, 8UJB|1|S2|C|1766, 8UJB|1|S2|C|1767, 8UJB|1|S2|A|1768, 8UJB|1|S2|C|1769, 8UJB|1|S2|G|1770, 8UJB|1|S2|C|1773, 8UJB|1|S2|C|1774
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8UJB|1|S2|C|1756
8UJB|1|S2|G|1757
8UJB|1|S2|G|1758
8UJB|1|S2|G|1759
8UJB|1|S2|G|1760
8UJB|1|S2|U|1761
8UJB|1|S2|C|1762
8UJB|1|S2|G|1763
8UJB|1|S2|G|1764
8UJB|1|S2|C|1765
8UJB|1|S2|C|1766
8UJB|1|S2|C|1767
8UJB|1|S2|A|1768
8UJB|1|S2|C|1769
8UJB|1|S2|G|1770
8UJB|1|S2|G|1771
8UJB|1|S2|C|1772
8UJB|1|S2|C|1773
8UJB|1|S2|C|1774
8UJB|1|S2|U|1775
8UJB|1|S2|G|1776
8UJB|1|S2|G|1777
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain LW
- Ribosomal protein L24
- Chain SG
- 40S ribosomal protein S6
Coloring options: