HL_8UJD_012

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GGCGGACUGUCCCCAGUGCGCC

Length

22 nucleotides

Bulged bases

8UJD|1|L5|G|1178, 8UJD|1|L5|U|1179, 8UJD|1|L5|C|1181, 8UJD|1|L5|C|1182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJD|1|L5|G|1170
8UJD|1|L5|G|1171
8UJD|1|L5|C|1172
8UJD|1|L5|G|1173
8UJD|1|L5|G|1174
8UJD|1|L5|A|1175
8UJD|1|L5|C|1176
8UJD|1|L5|U|1177
8UJD|1|L5|G|1178
8UJD|1|L5|U|1179
8UJD|1|L5|C|1180
8UJD|1|L5|C|1181
8UJD|1|L5|C|1182
8UJD|1|L5|C|1183
8UJD|1|L5|A|1184
8UJD|1|L5|G|1185
8UJD|1|L5|U|1186
8UJD|1|L5|G|1187
8UJD|1|L5|C|1188
8UJD|1|L5|G|1189
8UJD|1|L5|C|1190
8UJD|1|L5|C|1191

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

Large ribosomal subunit protein uL18

Chain LI

Ribosomal protein uL16-like