HL_8UJD_014

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

8UJD|1|L5|C|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJD_014 not in the Motif Atlas

Homologous match to HL_8CRE_013

Geometric discrepancy: 0.0735

The information below is about HL_8CRE_013

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8UJD|1|L5|U|1317
8UJD|1|L5|C|1318
8UJD|1|L5|U|1319
8UJD|1|L5|U|1320
8UJD|1|L5|G|1321
8UJD|1|L5|A|1322
8UJD|1|L5|A|1323
8UJD|1|L5|A|1324
8UJD|1|L5|C|1325
8UJD|1|L5|A|1326

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain La

60S ribosomal protein L27a

Chain Le

60S ribosomal protein L32