3D structure

PDB id
8UJD (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human 60S ribosome with eIF6
Experimental method
ELECTRON MICROSCOPY
Resolution
2.96 Å

Loop

Sequence
AGCAGUU
Length
7 nucleotides
Bulged bases
8UJD|1|L5|G|2421, 8UJD|1|L5|U|2425
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UJD_032 not in the Motif Atlas
Homologous match to HL_8CRE_031
Geometric discrepancy: 0.1765
The information below is about HL_8CRE_031
Detailed Annotation
Pseudoknot geometry with 3' bulge
Broad Annotation
No text annotation
Motif group
HL_57176.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
14

Unit IDs

8UJD|1|L5|A|2420
8UJD|1|L5|G|2421
8UJD|1|L5|C|2422
8UJD|1|L5|A|2423
8UJD|1|L5|G|2424
8UJD|1|L5|U|2425
8UJD|1|L5|U|2426

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LP
60S ribosomal protein L17
Chain LR
60S ribosomal protein L19
Chain Ll
60S ribosomal protein L39

Coloring options:


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