HL_8UJD_043

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

8UJD|1|L5|C|2814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJD_043 not in the Motif Atlas

Homologous match to HL_8P9A_153

Geometric discrepancy: 0.0979

The information below is about HL_8P9A_153

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8UJD|1|L5|U|2810
8UJD|1|L5|G|2811
8UJD|1|L5|A|2812
8UJD|1|L5|A|2813
8UJD|1|L5|C|2814
8UJD|1|L5|A|2815
8UJD|1|L5|G|2816

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19