3D structure

PDB id
8UJD (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human 60S ribosome with eIF6
Experimental method
ELECTRON MICROSCOPY
Resolution
2.96 Å

Loop

Sequence
GGUGC
Length
5 nucleotides
Bulged bases
8UJD|1|L5|G|3615
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UJD_045 not in the Motif Atlas
Homologous match to HL_8CRE_043
Geometric discrepancy: 0.2226
The information below is about HL_8CRE_043
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_78677.1
Basepair signature
cWW-F-F
Number of instances in this motif group
2

Unit IDs

8UJD|1|L5|G|3614
8UJD|1|L5|G|3615
8UJD|1|L5|U|3616
8UJD|1|L5|G|3617
8UJD|1|L5|C|3618

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LR
60S ribosomal protein L19
Chain LW
Ribosomal protein L24

Coloring options:


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