HL_8UJD_074

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GGAGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJD_074 not in the Motif Atlas

Homologous match to HL_8P9A_185

Geometric discrepancy: 0.091

The information below is about HL_8P9A_185

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8UJD|1|L7|G|86
8UJD|1|L7|G|87
8UJD|1|L7|A|88
8UJD|1|L7|G|89
8UJD|1|L7|A|90
8UJD|1|L7|C|91

Current chains

Chain L7

5S rRNA [Homo sapiens]

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LI

Ribosomal protein uL16-like

Chain LS

60S ribosomal protein L18a