HL_8UJJ_015

3D structure

PDB id

8UJJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

GGACUGUCCCCAGUGC

Length

16 nucleotides

Bulged bases

8UJJ|1|L5|G|1178, 8UJJ|1|L5|U|1179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJJ|1|L5|G|1173
8UJJ|1|L5|G|1174
8UJJ|1|L5|A|1175
8UJJ|1|L5|C|1176
8UJJ|1|L5|U|1177
8UJJ|1|L5|G|1178
8UJJ|1|L5|U|1179
8UJJ|1|L5|C|1180
8UJJ|1|L5|C|1181
8UJJ|1|L5|C|1182
8UJJ|1|L5|C|1183
8UJJ|1|L5|A|1184
8UJJ|1|L5|G|1185
8UJJ|1|L5|U|1186
8UJJ|1|L5|G|1187
8UJJ|1|L5|C|1188

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

Large ribosomal subunit protein uL18

Chain LI

Ribosomal protein uL16-like