HL_8UJJ_018

3D structure

PDB id

8UJJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

UCGCACGAAA

Length

10 nucleotides

Bulged bases

8UJJ|1|L5|C|1365, 8UJJ|1|L5|G|1366, 8UJJ|1|L5|C|1367, 8UJJ|1|L5|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJJ|1|L5|U|1364
8UJJ|1|L5|C|1365
8UJJ|1|L5|G|1366
8UJJ|1|L5|C|1367
8UJJ|1|L5|A|1368
8UJJ|1|L5|C|1369
8UJJ|1|L5|G|1370
8UJJ|1|L5|A|1371
8UJJ|1|L5|A|1372
8UJJ|1|L5|A|1373

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4

Chain LL

Large ribosomal subunit protein eL13

Chain LN

60S ribosomal protein L15

Chain LY

60S ribosomal protein L26