HL_8UJJ_041
3D structure
- PDB id
- 8UJJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated A-P state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.56 Å
Loop
- Sequence
- GUUCUCUUU
- Length
- 9 nucleotides
- Bulged bases
- 8UJJ|1|L5|U|2631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UJJ_041 not in the Motif Atlas
- Homologous match to HL_8P9A_148
- Geometric discrepancy: 0.254
- The information below is about HL_8P9A_148
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- Pseudoknot geometry
- Motif group
- HL_22758.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8UJJ|1|L5|G|2624
8UJJ|1|L5|U|2625
8UJJ|1|L5|U|2626
8UJJ|1|L5|C|2627
8UJJ|1|L5|U|2628
8UJJ|1|L5|C|2629
8UJJ|1|L5|U|2630
8UJJ|1|L5|U|2631
8UJJ|1|L5|U|2632
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LR
- 60S ribosomal protein L19
- Chain LU
- Heparin-binding protein HBp15
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