HL_8UJJ_050

3D structure

PDB id

8UJJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

8UJJ|1|L5|C|3673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJJ_050 not in the Motif Atlas

Geometric match to HL_6CZR_103

Geometric discrepancy: 0.2507

The information below is about HL_6CZR_103

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8UJJ|1|L5|C|3668
8UJJ|1|L5|G|3669
8UJJ|1|L5|C|3670
8UJJ|1|L5|G|3671
8UJJ|1|L5|G|3672
8UJJ|1|L5|C|3673
8UJJ|1|L5|G|3674

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15