HL_8UJJ_056

3D structure

PDB id

8UJJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

GAGCCCCGAGGGGCUC

Length

16 nucleotides

Bulged bases

8UJJ|1|L5|G|4104

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJJ|1|L5|G|4097
8UJJ|1|L5|A|4098
8UJJ|1|L5|G|4099
8UJJ|1|L5|C|4100
8UJJ|1|L5|C|4101
8UJJ|1|L5|C|4102
8UJJ|1|L5|C|4103
8UJJ|1|L5|G|4104
8UJJ|1|L5|A|4105
8UJJ|1|L5|G|4106
8UJJ|1|L5|G|4107
8UJJ|1|L5|G|4108
8UJJ|1|L5|G|4109
8UJJ|1|L5|C|4110
8UJJ|1|L5|U|4111
8UJJ|1|L5|C|4112

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain Lg

60S ribosomal protein L34

Chain SB

40S ribosomal protein S3a