HL_8UJJ_071

3D structure

PDB id

8UJJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8UJJ|1|L5|G|4694, 8UJJ|1|L5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJJ_071 not in the Motif Atlas

Homologous match to HL_8CRE_066

Geometric discrepancy: 0.1139

The information below is about HL_8CRE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8UJJ|1|L5|C|4688
8UJJ|1|L5|U|4689
8UJJ|1|L5|G|4690
8UJJ|1|L5|A|4691
8UJJ|1|L5|A|4692
8UJJ|1|L5|C|4693
8UJJ|1|L5|G|4694
8UJJ|1|L5|C|4695
8UJJ|1|L5|C|4696
8UJJ|1|L5|U|4697
8UJJ|1|L5|C|4698
8UJJ|1|L5|U|4699
8UJJ|1|L5|A|4700
8UJJ|1|L5|A|4701
8UJJ|1|L5|G|4702

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Large ribosomal subunit protein eL40