HL_8UJJ_118

3D structure

PDB id

8UJJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

GGUCGGCCCACGGC

Length

14 nucleotides

Bulged bases

8UJJ|1|S2|G|1760, 8UJJ|1|S2|C|1762, 8UJJ|1|S2|G|1763, 8UJJ|1|S2|G|1764, 8UJJ|1|S2|C|1765, 8UJJ|1|S2|C|1766, 8UJJ|1|S2|C|1767, 8UJJ|1|S2|A|1768, 8UJJ|1|S2|C|1769, 8UJJ|1|S2|G|1770, 8UJJ|1|S2|G|1771

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJJ|1|S2|G|1759
8UJJ|1|S2|G|1760
8UJJ|1|S2|U|1761
8UJJ|1|S2|C|1762
8UJJ|1|S2|G|1763
8UJJ|1|S2|G|1764
8UJJ|1|S2|C|1765
8UJJ|1|S2|C|1766
8UJJ|1|S2|C|1767
8UJJ|1|S2|A|1768
8UJJ|1|S2|C|1769
8UJJ|1|S2|G|1770
8UJJ|1|S2|G|1771
8UJJ|1|S2|C|1772

Current chains

Chain S2

18S rRNA

Nearby chains