HL_8UJK_027

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GCCGAAAC

Length

8 nucleotides

Bulged bases

8UJK|1|L5|C|1762, 8UJK|1|L5|C|1763, 8UJK|1|L5|G|1764, 8UJK|1|L5|A|1765, 8UJK|1|L5|A|1766, 8UJK|1|L5|A|1767

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJK|1|L5|G|1761
8UJK|1|L5|C|1762
8UJK|1|L5|C|1763
8UJK|1|L5|G|1764
8UJK|1|L5|A|1765
8UJK|1|L5|A|1766
8UJK|1|L5|A|1767
8UJK|1|L5|C|1768

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LJ

60S ribosomal protein L11

Chain SP

Small ribosomal subunit protein uS19

Chain SS

40S ribosomal protein S18