HL_8UJK_041

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

8UJK|1|L5|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJK_041 not in the Motif Atlas

Homologous match to HL_8P9A_148

Geometric discrepancy: 0.2228

The information below is about HL_8P9A_148

Detailed Annotation

Pseudoknot geometry

Broad Annotation

Pseudoknot geometry

Motif group

HL_68642.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8UJK|1|L5|G|2624
8UJK|1|L5|U|2625
8UJK|1|L5|U|2626
8UJK|1|L5|C|2627
8UJK|1|L5|U|2628
8UJK|1|L5|C|2629
8UJK|1|L5|U|2630
8UJK|1|L5|U|2631
8UJK|1|L5|U|2632

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

Heparin-binding protein HBp15