HL_8UJK_043

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

CGGUUCCGG

Length

9 nucleotides

Bulged bases

8UJK|1|L5|U|2707, 8UJK|1|L5|U|2708, 8UJK|1|L5|C|2709, 8UJK|1|L5|G|2711

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJK_043 not in the Motif Atlas

Homologous match to HL_8CRE_038

Geometric discrepancy: 0.4911

The information below is about HL_8CRE_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8UJK|1|L5|C|2704
8UJK|1|L5|G|2705
8UJK|1|L5|G|2706
8UJK|1|L5|U|2707
8UJK|1|L5|U|2708
8UJK|1|L5|C|2709
8UJK|1|L5|C|2710
8UJK|1|L5|G|2711
8UJK|1|L5|G|2712

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

Heparin-binding protein HBp15

Chain LX

60S ribosomal protein L23a