HL_8UJK_048

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GGUGC

Length

5 nucleotides

Bulged bases

8UJK|1|L5|G|3615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJK_048 not in the Motif Atlas

Homologous match to HL_8CRE_043

Geometric discrepancy: 0.1543

The information below is about HL_8CRE_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78677.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

8UJK|1|L5|G|3614
8UJK|1|L5|G|3615
8UJK|1|L5|U|3616
8UJK|1|L5|G|3617
8UJK|1|L5|C|3618

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LW

Ribosomal protein L24

Chain S2

Small subunit ribosomal RNA; SSU rRNA