HL_8UJK_055

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8UJK|1|L5|A|3876, 8UJK|1|L5|A|3877, 8UJK|1|L5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJK_055 not in the Motif Atlas

Homologous match to HL_8CRE_049

Geometric discrepancy: 0.1089

The information below is about HL_8CRE_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8UJK|1|L5|G|3873
8UJK|1|L5|G|3874
8UJK|1|L5|G|3875
8UJK|1|L5|A|3876
8UJK|1|L5|A|3877
8UJK|1|L5|C|3878
8UJK|1|L5|G|3879
8UJK|1|L5|G|3880
8UJK|1|L5|G|3881
8UJK|1|L5|C|3882

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain Le

60S ribosomal protein L32