HL_8UJK_058

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8UJK|1|L5|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJK_058 not in the Motif Atlas

Homologous match to HL_8P9A_165

Geometric discrepancy: 0.288

The information below is about HL_8P9A_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8UJK|1|L5|C|4193
8UJK|1|L5|U|4194
8UJK|1|L5|G|4195
8UJK|1|L5|G|4196
8UJK|1|L5|G|4197
8UJK|1|L5|G|4198
8UJK|1|L5|C|4199
8UJK|1|L5|G|4200
8UJK|1|L5|G|4201

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Ribosomal protein uL16-like

Chain Lb

Large ribosomal subunit protein eL29

Chain Pt

Transfer RNA; tRNA