3D structure

PDB id
8UJK (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ HHT and CHX treated A-P-Z state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.54 Å

Loop

Sequence
CAGAAGGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UJK_061 not in the Motif Atlas
Homologous match to HL_8CRE_056
Geometric discrepancy: 0.1267
The information below is about HL_8CRE_056
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_93324.4
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
24

Unit IDs

8UJK|1|L5|C|4270
8UJK|1|L5|A|4271
8UJK|1|L5|G|4272
8UJK|1|L5|A|4273
8UJK|1|L5|A|4274
8UJK|1|L5|G|4275
8UJK|1|L5|G|4276
8UJK|1|L5|G|4277

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LI
Ribosomal protein uL16-like
Chain LT
60S ribosomal protein L21
Chain Lo
60S ribosomal protein L36a
Chain Pt
Transfer RNA; tRNA

Coloring options:


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