HL_8UJK_071

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8UJK|1|L5|G|4694, 8UJK|1|L5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJK_071 not in the Motif Atlas

Homologous match to HL_8CRE_066

Geometric discrepancy: 0.1051

The information below is about HL_8CRE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8UJK|1|L5|C|4688
8UJK|1|L5|U|4689
8UJK|1|L5|G|4690
8UJK|1|L5|A|4691
8UJK|1|L5|A|4692
8UJK|1|L5|C|4693
8UJK|1|L5|G|4694
8UJK|1|L5|C|4695
8UJK|1|L5|C|4696
8UJK|1|L5|U|4697
8UJK|1|L5|C|4698
8UJK|1|L5|U|4699
8UJK|1|L5|A|4700
8UJK|1|L5|A|4701
8UJK|1|L5|G|4702

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Large ribosomal subunit protein eL40