HL_8UJK_072

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GGAGAGGC

Length

8 nucleotides

Bulged bases

8UJK|1|L5|G|4910, 8UJK|1|L5|A|4911, 8UJK|1|L5|G|4913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJK_072 not in the Motif Atlas

Geometric match to HL_8CRE_068

Geometric discrepancy: 0.2145

The information below is about HL_8CRE_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07886.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

8UJK|1|L5|G|4907
8UJK|1|L5|G|4908
8UJK|1|L5|A|4909
8UJK|1|L5|G|4910
8UJK|1|L5|A|4911
8UJK|1|L5|G|4912
8UJK|1|L5|G|4913
8UJK|1|L5|C|4914

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LO

60S ribosomal protein L13a