HL_8UJK_085
3D structure
- PDB id
- 8UJK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated A-P-Z state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.54 Å
Loop
- Sequence
- GUUGAUCCUGC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UJK_085 not in the Motif Atlas
- Homologous match to HL_8CRE_191
- Geometric discrepancy: 0.0878
- The information below is about HL_8CRE_191
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_31940.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8UJK|1|S2|G|7
8UJK|1|S2|U|8
8UJK|1|S2|U|9
8UJK|1|S2|G|10
8UJK|1|S2|A|11
8UJK|1|S2|U|12
8UJK|1|S2|C|13
8UJK|1|S2|C|14
8UJK|1|S2|U|15
8UJK|1|S2|G|16
8UJK|1|S2|C|17
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SC
- 40S ribosomal protein S2
- Chain SX
- 40S ribosomal protein S23
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