HL_8UJK_095

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

8UJK|1|S2|A|500, 8UJK|1|S2|C|502, 8UJK|1|S2|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJK_095 not in the Motif Atlas

Homologous match to HL_8CRE_202

Geometric discrepancy: 0.2567

The information below is about HL_8CRE_202

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

8UJK|1|S2|C|498
8UJK|1|S2|G|499
8UJK|1|S2|A|500
8UJK|1|S2|C|501
8UJK|1|S2|C|502
8UJK|1|S2|C|503
8UJK|1|S2|G|504

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SY

40S ribosomal protein S24