HL_8UJK_115

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJK_115 not in the Motif Atlas

Homologous match to HL_8CRE_222

Geometric discrepancy: 0.2202

The information below is about HL_8CRE_222

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8UJK|1|S2|C|1565
8UJK|1|S2|G|1566
8UJK|1|S2|G|1567
8UJK|1|S2|C|1568
8UJK|1|S2|A|1569
8UJK|1|S2|G|1570

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SS

40S ribosomal protein S18

Chain ST

40S ribosomal protein S19