HL_8UJK_118

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

CCGGGGUCGGCCCACGGCCCUGG

Length

23 nucleotides

Bulged bases

8UJK|1|S2|G|1760, 8UJK|1|S2|C|1762, 8UJK|1|S2|G|1763, 8UJK|1|S2|G|1764, 8UJK|1|S2|C|1765, 8UJK|1|S2|C|1766, 8UJK|1|S2|C|1767, 8UJK|1|S2|A|1768, 8UJK|1|S2|C|1769, 8UJK|1|S2|G|1770, 8UJK|1|S2|C|1773

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJK|1|S2|C|1755
8UJK|1|S2|C|1756
8UJK|1|S2|G|1757
8UJK|1|S2|G|1758
8UJK|1|S2|G|1759
8UJK|1|S2|G|1760
8UJK|1|S2|U|1761
8UJK|1|S2|C|1762
8UJK|1|S2|G|1763
8UJK|1|S2|G|1764
8UJK|1|S2|C|1765
8UJK|1|S2|C|1766
8UJK|1|S2|C|1767
8UJK|1|S2|A|1768
8UJK|1|S2|C|1769
8UJK|1|S2|G|1770
8UJK|1|S2|G|1771
8UJK|1|S2|C|1772
8UJK|1|S2|C|1773
8UJK|1|S2|C|1774
8UJK|1|S2|U|1775
8UJK|1|S2|G|1776
8UJK|1|S2|G|1777

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

Ribosomal protein L24

Chain SG

40S ribosomal protein S6