HL_8UKB_005

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

8UKB|1|L5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UKB_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.3701

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8UKB|1|L5|U|204
8UKB|1|L5|C|205
8UKB|1|L5|U|206
8UKB|1|L5|G|207
8UKB|1|L5|A|208
8UKB|1|L5|U|209
8UKB|1|L5|C|210
8UKB|1|L5|G|211

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LY

60S ribosomal protein L26

Chain Le

60S ribosomal protein L32