HL_8UKB_058

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GACAUGAGAGGUGUAGAAUAAGUGGGAGGCCCCCGGCGCCGGUCCGCCGGCCCUGCGGGCCGCCGGUGAAAUACCACUACUCUGAUCGUU

Length

90 nucleotides

Bulged bases

8UKB|1|L5|G|3956, 8UKB|1|L5|U|3957, 8UKB|1|L5|A|3960, 8UKB|1|L5|G|3961, 8UKB|1|L5|A|3962, 8UKB|1|L5|G|3970, 8UKB|1|L5|A|3972, 8UKB|1|L5|C|3978, 8UKB|1|L5|C|3979, 8UKB|1|L5|G|3980, 8UKB|1|L5|G|3981, 8UKB|1|L5|C|3982, 8UKB|1|L5|G|3983, 8UKB|1|L5|C|3984, 8UKB|1|L5|C|3985, 8UKB|1|L5|G|4018, 8UKB|1|L5|G|4019, 8UKB|1|L5|U|4020, 8UKB|1|L5|C|4021, 8UKB|1|L5|C|4022, 8UKB|1|L5|G|4023, 8UKB|1|L5|C|4024, 8UKB|1|L5|C|4025, 8UKB|1|L5|G|4026, 8UKB|1|L5|G|4027, 8UKB|1|L5|C|4028, 8UKB|1|L5|C|4029, 8UKB|1|L5|C|4030, 8UKB|1|L5|U|4031, 8UKB|1|L5|G|4032, 8UKB|1|L5|C|4033, 8UKB|1|L5|G|4035, 8UKB|1|L5|G|4042, 8UKB|1|L5|G|4043, 8UKB|1|L5|U|4044, 8UKB|1|L5|A|4048, 8UKB|1|L5|U|4049, 8UKB|1|L5|C|4051, 8UKB|1|L5|C|4054, 8UKB|1|L5|A|4056, 8UKB|1|L5|U|4058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UKB|1|L5|G|3946
8UKB|1|L5|A|3947
8UKB|1|L5|C|3948
8UKB|1|L5|A|3949
8UKB|1|L5|U|3950
8UKB|1|L5|G|3951
8UKB|1|L5|A|3952
8UKB|1|L5|G|3953
8UKB|1|L5|A|3954
8UKB|1|L5|G|3955
8UKB|1|L5|G|3956
8UKB|1|L5|U|3957
8UKB|1|L5|G|3958
8UKB|1|L5|U|3959
8UKB|1|L5|A|3960
8UKB|1|L5|G|3961
8UKB|1|L5|A|3962
8UKB|1|L5|A|3963
8UKB|1|L5|U|3964
8UKB|1|L5|A|3965
8UKB|1|L5|A|3966
8UKB|1|L5|G|3967
8UKB|1|L5|U|3968
8UKB|1|L5|G|3969
8UKB|1|L5|G|3970
8UKB|1|L5|G|3971
8UKB|1|L5|A|3972
8UKB|1|L5|G|3973
8UKB|1|L5|G|3974
8UKB|1|L5|C|3975
8UKB|1|L5|C|3976
8UKB|1|L5|C|3977
8UKB|1|L5|C|3978
8UKB|1|L5|C|3979
8UKB|1|L5|G|3980
8UKB|1|L5|G|3981
8UKB|1|L5|C|3982
8UKB|1|L5|G|3983
8UKB|1|L5|C|3984
8UKB|1|L5|C|3985
8UKB|1|L5|G|4018
8UKB|1|L5|G|4019
8UKB|1|L5|U|4020
8UKB|1|L5|C|4021
8UKB|1|L5|C|4022
8UKB|1|L5|G|4023
8UKB|1|L5|C|4024
8UKB|1|L5|C|4025
8UKB|1|L5|G|4026
8UKB|1|L5|G|4027
8UKB|1|L5|C|4028
8UKB|1|L5|C|4029
8UKB|1|L5|C|4030
8UKB|1|L5|U|4031
8UKB|1|L5|G|4032
8UKB|1|L5|C|4033
8UKB|1|L5|G|4034
8UKB|1|L5|G|4035
8UKB|1|L5|G|4036
8UKB|1|L5|C|4037
8UKB|1|L5|C|4038
8UKB|1|L5|G|4039
8UKB|1|L5|C|4040
8UKB|1|L5|C|4041
8UKB|1|L5|G|4042
8UKB|1|L5|G|4043
8UKB|1|L5|U|4044
8UKB|1|L5|G|4045
8UKB|1|L5|A|4046
8UKB|1|L5|A|4047
8UKB|1|L5|A|4048
8UKB|1|L5|U|4049
8UKB|1|L5|A|4050
8UKB|1|L5|C|4051
8UKB|1|L5|C|4052
8UKB|1|L5|A|4053
8UKB|1|L5|C|4054
8UKB|1|L5|U|4055
8UKB|1|L5|A|4056
8UKB|1|L5|C|4057
8UKB|1|L5|U|4058
8UKB|1|L5|C|4059
8UKB|1|L5|U|4060
8UKB|1|L5|G|4061
8UKB|1|L5|A|4062
8UKB|1|L5|U|4063
8UKB|1|L5|C|4064
8UKB|1|L5|G|4065
8UKB|1|L5|U|4066
8UKB|1|L5|U|4067

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Li

60S ribosomal protein L36

Chain Lz

60S ribosomal protein L10a

Chain SB

40S ribosomal protein S3a