HL_8UKB_061

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8UKB|1|L5|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UKB_061 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.0993

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8UKB|1|L5|C|4193
8UKB|1|L5|U|4194
8UKB|1|L5|G|4195
8UKB|1|L5|G|4196
8UKB|1|L5|G|4197
8UKB|1|L5|G|4198
8UKB|1|L5|C|4199
8UKB|1|L5|G|4200
8UKB|1|L5|G|4201

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Ribosomal protein uL16-like

Chain Lb

Large ribosomal subunit protein eL29