HL_8UKB_068

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UKB_068 not in the Motif Atlas

Homologous match to HL_8P9A_172

Geometric discrepancy: 0.1215

The information below is about HL_8P9A_172

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8UKB|1|L5|C|4417
8UKB|1|L5|G|4418
8UKB|1|L5|U|4419
8UKB|1|L5|U|4420
8UKB|1|L5|C|4421
8UKB|1|L5|A|4422
8UKB|1|L5|U|4423
8UKB|1|L5|A|4424
8UKB|1|L5|G|4425

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CB

Elongation factor 2

Chain LI

Ribosomal protein uL16-like

Chain Lm

Large ribosomal subunit protein eL40