HL_8UKB_074

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8UKB|1|L5|G|4694, 8UKB|1|L5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UKB_074 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0698

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8UKB|1|L5|C|4688
8UKB|1|L5|U|4689
8UKB|1|L5|G|4690
8UKB|1|L5|A|4691
8UKB|1|L5|A|4692
8UKB|1|L5|C|4693
8UKB|1|L5|G|4694
8UKB|1|L5|C|4695
8UKB|1|L5|C|4696
8UKB|1|L5|U|4697
8UKB|1|L5|C|4698
8UKB|1|L5|U|4699
8UKB|1|L5|A|4700
8UKB|1|L5|A|4701
8UKB|1|L5|G|4702

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Large ribosomal subunit protein eL40