HL_8UKB_076

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GGAGAGGC

Length

8 nucleotides

Bulged bases

8UKB|1|L5|G|4910, 8UKB|1|L5|A|4911, 8UKB|1|L5|G|4913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UKB_076 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.123

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8UKB|1|L5|G|4907
8UKB|1|L5|G|4908
8UKB|1|L5|A|4909
8UKB|1|L5|G|4910
8UKB|1|L5|A|4911
8UKB|1|L5|G|4912
8UKB|1|L5|G|4913
8UKB|1|L5|C|4914

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LO

60S ribosomal protein L13a