HL_8UKB_088

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

8UKB|1|S2|U|161

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UKB_088 not in the Motif Atlas

Homologous match to HL_8C3A_194

Geometric discrepancy: 0.3252

The information below is about HL_8C3A_194

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8UKB|1|S2|G|156
8UKB|1|S2|U|157
8UKB|1|S2|A|158
8UKB|1|S2|A|159
8UKB|1|S2|U|160
8UKB|1|S2|U|161
8UKB|1|S2|C|162

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24