HL_8UKB_095

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

8UKB|1|S2|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UKB_095 not in the Motif Atlas

Homologous match to HL_8P9A_200

Geometric discrepancy: 0.2168

The information below is about HL_8P9A_200

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

8UKB|1|S2|C|462
8UKB|1|S2|C|463
8UKB|1|S2|A|464
8UKB|1|S2|A|465
8UKB|1|S2|G|466
8UKB|1|S2|G|467

Current chains

Chain S2

18S rRNA

Nearby chains

Chain CB

Elongation factor 2

Chain LV

60S ribosomal protein L23

Chain SG

40S ribosomal protein S6