HL_8UKB_119

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CCCCGCCGGGGUCGGCCCACGGCCCUGGCGGAGCG

Length

35 nucleotides

Bulged bases

8UKB|1|S2|C|1753, 8UKB|1|S2|G|1757, 8UKB|1|S2|G|1760, 8UKB|1|S2|C|1762, 8UKB|1|S2|G|1763, 8UKB|1|S2|G|1764, 8UKB|1|S2|C|1765, 8UKB|1|S2|C|1766, 8UKB|1|S2|C|1767, 8UKB|1|S2|A|1768, 8UKB|1|S2|C|1769, 8UKB|1|S2|G|1770, 8UKB|1|S2|C|1773, 8UKB|1|S2|C|1783

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UKB|1|S2|C|1750
8UKB|1|S2|C|1751
8UKB|1|S2|C|1752
8UKB|1|S2|C|1753
8UKB|1|S2|G|1754
8UKB|1|S2|C|1755
8UKB|1|S2|C|1756
8UKB|1|S2|G|1757
8UKB|1|S2|G|1758
8UKB|1|S2|G|1759
8UKB|1|S2|G|1760
8UKB|1|S2|U|1761
8UKB|1|S2|C|1762
8UKB|1|S2|G|1763
8UKB|1|S2|G|1764
8UKB|1|S2|C|1765
8UKB|1|S2|C|1766
8UKB|1|S2|C|1767
8UKB|1|S2|A|1768
8UKB|1|S2|C|1769
8UKB|1|S2|G|1770
8UKB|1|S2|G|1771
8UKB|1|S2|C|1772
8UKB|1|S2|C|1773
8UKB|1|S2|C|1774
8UKB|1|S2|U|1775
8UKB|1|S2|G|1776
8UKB|1|S2|G|1777
8UKB|1|S2|C|1778
8UKB|1|S2|G|1779
8UKB|1|S2|G|1780
8UKB|1|S2|A|1781
8UKB|1|S2|G|1782
8UKB|1|S2|C|1783
8UKB|1|S2|G|1784

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

Ribosomal protein L24

Chain SG

40S ribosomal protein S6